The aging brain: Protein mapping furnishes new insights

However, the molecular changes that underlie this loss of function have remained largely obscure. To improve our mechanistic understanding, researchers carry out molecular profiling studies to investigate the different components of brain endothelial cells and collect their findings in large databases. "The transcriptome -- that is to say, the RNA contained in endothelial cells -- has since been quite comprehensively mapped," says LMU professor Martin Dichgans, Director of the Institute for Stroke and Dementia Research at University of Munich Hospital and Principal Investigator at the SyNergy Cluster of Excellence. "What has been lacking is corresponding data on the complete set of proteins in the cells, the proteome." A study recently published in the journal Nature Aging, which had major contributions by researchers from LMU and SyNergy, has now closed this knowledge gap.

Dysregulated metabolism

For the study, the team developed a protocol for enriching brain endothelial cells in mice, which makes it possible to resolve age-related changes in protein composition. Using an unsupervised (computer-aided) cluster analysis, the scientists then related these protein dynamics to biological functions. "Our results show a dysregulation of key molecules involved in the uptake of substances into cells, in receptor recycling, and in the degradation of molecules within specific cellular compartments called lysosomes," says Dichgans.

One of the most striking changes concerned a decrease in proteins involved in vesicle-mediated transport. In addition, the study provides evidence that deficiency of apolipoprotein E, a protein involved in lipid metabolism results in a signature of accelerated endothelial aging. "The results complement and expand findings from studies on the RNA sequencing of brain endothelial cells during aging," summarizes Dichgans. "Our proteomic approach captures processes that are not detected at the RNA level." Overall, the study offers a framework for understanding important endothelial signaling pathways during aging and serves as a data basis for future analyses of brain endothelial function. The researchers are making their data on age-related protein abundance of the mouse endothelium available in a publicly accessible database for further use.