Mitochondrial genome editing technique yields useful traits

The researchers began the work in the energy-producing portion of a cell, the mitochondria. In plants, aberrations within the mitochondrial genome can be associated with the inability to make pollen, a trait known as cytoplasmic male sterility (CMS) that has been successfully exploited for the production of high-yielding hybrid seeds in many important crops. Naturally occurring CMS-based systems that are robust enough to facilitate commercial scale hybrid seed production are limited, however.

In their proof-of-concept study, the NC State researchers, together with colleagues from Precision BioSciences and Elo Life Systems, deployed a unique strategy to test whether the CMS trait could be generated in tobacco, a commonly used model species in plant research. The researchers initially took an essential mitochondrial gene called atp1 and moved it to the nucleus after placing it under the regulatory control of an element -- known as a promoter -- that they predicted would allow the transferred atp1 gene to be expressed in every cell of the plant except those responsible for producing pollen. The researchers then used genome editing tools to permanently remove the native atp1 gene from the mitochondria.

Their approach was successful.

"The results exceeded our expectations," said Ralph Dewey, Philip Morris Professor of Crop Science at NC State and corresponding author of a paper describing the research. "The plants looked completely normal up until they began to flower, but then failed to produce pollen because the transferred atp1 gene was no longer expressed. Importantly, because the original atp1 gene was deleted from the mitochondrial genome, the trait will be inherited maternally, which is a crucial consideration for large-scale hybrid seed production."

Pollen wasn't the only casualty of the technique. When cross-fertilized using pollen from a neighboring normal plant, their tobacco plants unexpectedly produced small, hollow seeds, much like those seen in popular "seedless" fruits such as watermelons and grapes.

"That's because the promoter that we chose not only failed to express during pollen formation, but also during early seed development," Dewey said.

Dewey said that his team is now working to decouple these results so that researchers can achieve either pollen infertility or the seedless trait alone, instead of both at the same time.

Dewey also stressed that the findings shouldn't be limited to tobacco plants. Their next generation of experiments will include testing the seedless trait in tomato, a close relative of tobacco. They will also test their novel CMS trait in a grain such as rice to test the efficacy of their system in a crop where hybrid seed production is important for achieving maximal yields.

"Knowing the way the system works, there's no reason to believe that we couldn't effectively transfer the technology to other plant species," he said.

The study appears in Frontiers in Plant Science. Devarshi Selote, H. Carol Griffin, Allison N. Dickey, Derek Jantz, J. Jeff Smith, Anna Matthiadis, Josh Strable, Caitlin Kestell and William A. Smith co-authored the paper. The work was funded in part by a grant from Elo Life Systems and supported by the NC State Plant Breeding Consortium. Dewey and several other researchers have filed a patent on the new technique.